Tuesday 26 June

• Analysis and prediction of HLA interaction with phosphorylated peptides - Marthe Solleder (Group: David Gfeller)
• A cloud-based service for the automated creation of genome-scale metabolic network model from a microbial genome - Sebastien Moretti (Group: Vital-IT)
• Use of the Rhea reaction resource in UniProtKB: enzyme annotation for metabolic and metabolomic data mining and integration - Anne Morgat (Group: Alan Bridge)
• Swiss-PO. A new Web tool to help predicting mutation pathogenicity for precision oncology - Fanny Krebs (Group: Olivier Michielin)
• Applying One-Class learning algorithms for predicting phage-bacteria interactions - Juan López (Group: Carlos Peña)
• Model Archive - a deposition system for persistent archiving of theoretical protein structure models - Jürgen Haas (Group: Torsten Schwede)
• Herpesvirus resource in ViralZone - Patrick Masson (Group: Alan Bridge)
• The Swiss Molecular Tumor Board: Comprehensive Molecular Cancer Diagnostics in the Clinics - Franziska Singer (Group: Daniel Stekhoven)
• Gaussian Processes for time-lapse microscopy data - Athos Fiori (Group: van Nimwegen)
• Embedded fast pathogen detection in resource limited conditions - Simone Casale-Brunet (Group: Vital-IT)
• Pairing TCR to pMHC: A Keystone in Immunotherapy - Marta A. S. Perez (Group: Vincent Zoete)
• V-pipe - Pipeline analysing NGS data of short viral genomes - Ivan Topolsky (Group: Niko Beerenwinkel)
• Update on arrayMap Cancer Genome Resource - Qingyao Huang (Group: Michael Baudis)
• From reads to tree skipping assembly, gene annotation and orthology prediction - David Dylus (Group: Christophe Dessimoz)
• Ligand-Protein Interaction Fingerprints for Virtual Screening and Computer-Aided Drug Design - Krystel El Hage (Group: Vincent Zoete)

• Curation is key: quantifying the impact of manual gene annotation improvements
  Robert Waterhouse (Group: Robert Waterhouse)
• Curation of rapidly-evolving and potentially controversial hypotheses of anatomical homology
  Frédéric Bastian (Group: Marc Robinson-Rechavi)
• A comparative analysis of empirical genotype-phenotype maps
  Joshua Payne (Group: Joshua Payne)
• Interplay between Notch signaling and ID factors during adult and embryonic neurogenesis
  Marcelo Boareto (Collaborating group: Dagmar Iber)
• Rare codons enhance translation of mRNAs required for cellular proliferation
  João Guimarães (Group: Mihaela Zavolan)

• Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
  Kjong-Van Lehmann (Group: Gunnar Rätsch)
• Vital-DH projects@Vital-IT: research and infrastructure challenges
  Martial Sankar and Claire Clivaz (Group: Vital-IT)
• A SPARQLing example of federated genome and proteome annotation - HAMAP
  Jerven Bolleman (Group: Alan Bridge)
• Pushing the limits of de novo genome assembly for complex prokaryotic genomes and enabling accurate genome annotation by proteogenomics
  Michael Schmid (Group: Christian Ahrens)
• Knoto-ID, a tool for the topological analysis of open protein chains using the concept of knotoids
  Dimoklis Goundaroulis (Group: Andrzej Stasiak)

Wednesday 27 June

• Glyconnect, a platform to explore glycoproteins in cancer - Davide Alocci (Group: Frédérique Lisacek)
• Exploration a large spectrum of machine-learning techniques to predict phage-bacterium interactions - Diogo Leite (Group: Carlos Peña)
• Large-scale reanalysis of proteomics data - An application to the HeLa cell line - Thibault Robin (Group: Lydie Lane, Amos Bairoch)
• Association of novel and highly divergent human viruses to diseases of unknown etiology, using metagenomics - Francisco Brito (Group: Evgeny Zdobnov)
• Tree-ensemble analysis tests for presence of multifurcations in single cell data - Will Macnair (Group: Manfred Claassen)
• Structure-based database of B-propeller lectins for identification and prediction in nature - François Bonnardel (Group: Frédérique Lisacek)
• Towards hypothesis-free identification of disease-associated immune cell signatures - an application to multiple sclerosis - Eirini Arvaniti (Group: Manfred Claassen)
• Characterising gene evolutionary-functional correspondences for an enhanced resolution of gene function - Livio Ruzzante (Group: Robert Waterhouse)
• Bionotator and NRPro: Bioinformatics Tools for the study of Nonribosomal Peptides - Emma Ricart Altimiras (Group: Frédérique Lisacek)
• Whole genome sequencing and comparative genomics of 9 Pseudomonas strains to explore their differing protective effects against potato late blight - Adithi Varadarajan (Group: Christian Ahrens)

1. Building a SIB Resources Community around User-centered Design and Knowledge Sharing
2. Handling biomedical data with BioMedIT infrastructures for personalized medicine
3. HPC Tools for Reproducible Research and Training: Singularity and Hail Genomics
4. Embedded bioinformatics @ SIB, the past, present and future
5. Computer-aided drug design with SwissDrugDesign
6. Data quality control – who, what, when, where and how
7. Single Cell protocols – From raw reads to cell clusters in a few easy steps